PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g10410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 252aa    MW: 28536.9 Da    PI: 6.9627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g10410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-0586105120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  CA11g10410  86 FSCPLCFKTFNRYNNMQMHM 105
                 89*****************9 PP

2zf-C2H215.16.5e-05170192123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  CA11g10410 170 FMCRKCGKAFAVRGDWRTHEKNC 192
                 89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.65E-581108No hitNo description
Gene3DG3DSA:3.30.160.601.9E-586105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6686113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576679.18E-7152190No hitNo description
Gene3DG3DSA:3.30.160.606.3E-6166190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549170190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
ENKEESFISN FGDEDQDDES VSVALQLGLP NPSPQDVISS ISNTNKEQEE LTVANIGYSS  60
TTSSTLHKGQ YWIPTPAQIL IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR  120
GTQPTAMLRL PCFCCAPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA  180
VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG HEAYGIDCLE EEDEPASEIE  240
QDHDHDHDPS N*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548865.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK4D9181e-162K4D918_SOLLC; Uncharacterized protein
STRINGSolyc11g062060.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-131C2H2 family protein